The first layer： Director, Advisory Committee, General Meeting
The Second layer：Deputy Director
The third layer：
The jurisdiction of the Deputy Director are:
　1. Administration
　　1-1. Administration Office
　　1-2. Information Committee
　　　　1-2-1. Information Office
　　1-3. Environmental Planning Committee
　　1-4. Welfare Committee
　2. Academic Affairs
　　2-1. Academic Promotion Committee
　　2-2. Editing Committee for Research in Taiwan History
　　　　2-2-1. Editorial Office
　　2-3. Publication Committee
　　　　2-3-1. Editorial Office
　　2-4. Library File Management Committee
　　　　2-4-1. Taiwan Archives
　　　　2-4-2. Library
　　2-5. Oral History Committee
　　　　2-5-1. Oral History Office
　3. Research Groups
　　3-1. Social and Economic History
　　3-2. Colonial History
　　3-3. Ethno-History
　　3-4. Cultural History
　　3-5. Environmental History
　　3-6. Maritime History